rs30442275 SNP Detail

Summary

• ID
  rs30442275
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98067192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAAACC AGCATGTTCA
  CAATGAATGT GTCTCCAGGT CAACTTGCCC TTATCATAGT CTTTTTCTCC ATCCTTTTCT
  TAGTGTAAGG GTGTCTCAGA GCACATAGCC CACCCCCACC GCAGAAAAAG CCTAGGACCT
  TAAATTTTCT GTATTTCAAG TCAAGAAACA TATGAATTAG TTCTAAACAA TATTGGCTTT
  W
  TCCCCCAAAC TCAGACACTT TTGCAAGCTC TTTCACAAGA ACCGGGAACA CAGATGTTTG
  GGTAAGCCCA GGGTAGACAG GGCTAAGGCA TACCTCCTTG CTCCCTGGAG AGAAGACGGC
  TGGGAGGCTC CGCTGGCGAC TATGCTTGCA GTGGCCCAGC AGACCCTGCT GGACACGCAT
  CTTCTGTCTC TCCCTCTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49135482	NES12455790	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30442275					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49135482	NES12455790	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98067192 () rs orientation: forward

Symbol	Name	Function Class
Arhgef28	Rho guanine nucleotide exchange factor 28	within coordinates
Cpgi5995	CpG island 5995	143 bp proximal
Rr277834	regulatory region 277834	9 bp proximal
Rr285563	regulatory region 285563	1592 bp distal