rs30442276 SNP Detail

Summary

• ID
  rs30442276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98067153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATCACAA CAGATCATTT
  ATAATGAGTC CTTCCAATAC CAAGAAACCA GCATGTTCAC AATGAATGTG TCTCCAGGTC
  AACTTGCCCT TATCATAGTC TTTTTCTCCA TCCTTTTCTT AGTGTAAGGG TGTCTCAGAG
  CACATAGCCC ACCCCCACCG CAGAAAAAGC CTAGGACCTT AAATTTTCTG TATTTCAAGT
  Y
  AAGAAACATA TGAATTAGTT CTAAACAATA TTGGCTTTAT CCCCCAAACT CAGACACTTT
  TGCAAGCTCT TTCACAAGAA CCGGGAACAC AGATGTTTGG GTAAGCCCAG GGTAGACAGG
  GCTAAGGCAT ACCTCCTTGC TCCCTGGAGA GAAGACGGCT GGGAGGCTCC GCTGGCGACT
  ATGCTTGCAG TGGCCCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49135483	NES12455789	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30442276					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49135483	NES12455789	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98067153 () rs orientation: forward

Symbol	Name	Function Class
Arhgef28	Rho guanine nucleotide exchange factor 28	within coordinates
Cpgi5995	CpG island 5995	182 bp proximal
Rr277834	regulatory region 277834	48 bp proximal
Rr285563	regulatory region 285563	1553 bp distal