rs30442279 SNP Detail

Summary

• ID
  rs30442279
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98066970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGTCCTT CATCAGGGCA
  GTTCATGATA ACTTTTCAGT GAAATGGATT TTGAACTTGC TATATCCAAC TTTCAAGGAG
  CAAATAAGCT TCTTACATCA GTTGTTCAGA TCAATACTCA CACATGAAGA GCTAAATGAT
  CTATGACAAC ACACTGCCAT ACAACACGAT ATATTATTAT TAGTCTATCA CAACAGATCA
  K
  TTATAATGAG TCCTTCCAAT ACCAAGAAAC CAGCATGTTC ACAATGAATG TGTCTCCAGG
  TCAACTTGCC CTTATCATAG TCTTTTTCTC CATCCTTTTC TTAGTGTAAG GGTGTCTCAG
  AGCACATAGC CCACCCCCAC CGCAGAAAAA GCCTAGGACC TTAAATTTTC TGTATTTCAA
  GTCAAGAAAC ATATGAATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49135486	NES12455786	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30442279					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49135486	NES12455786	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98066970 () rs orientation: forward

Symbol	Name	Function Class
Arhgef28	Rho guanine nucleotide exchange factor 28	within coordinates
Cpgi5995	CpG island 5995	365 bp proximal
Rr277834	regulatory region 277834	231 bp proximal
Rr285563	regulatory region 285563	1370 bp distal