rs30445474 SNP Detail

Summary

• ID
  rs30445474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:42112360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA GGGTCTATAA AAGGGGACGG
  Y
  CTGCCCCCAA GAACTGTATG GCACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39693367	mCV24954871	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146410885	ENSMUSSNP5430283	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss325811625	CHEV_19_42198411	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30445474					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42112360 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	Intron
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	1834 bp downstream
Rr547822	regulatory region 547822	1374 bp distal