rs30446613 SNP Detail

Summary

• ID
  rs30446613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53894719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCAAAG GTATCTTAGT
  ATCATCTCCC CGCAGTATTT CCTTTTCTCT TCATGCCTAT CCCTATCTCT ACAGTACAGT
  CTATAAGCTT ACAAATACTC TGAGAATACT GTGCTCACCA AAGCCAGGAT CTATGCAAAT
  CCATACAACA GGCATTTCCA TGCCTCTTGA CGTCTTTTGC TTTGCAATAT GTGTTGAATA
  Y
  GCAACCAGTA CTTGCTGAAT GGAAAACAAA ATAGGGCACA TATTATTTTT TAGTAGCTAC
  AAAATGAACC AAATCTACTA TGAAATAAGT AAAACCAATG GCCATTTTTG ACAATTCATC
  TTGAATAGTA GCTATTTCTG GTGTAAAACT GTCTGTCAAG TCTATGGGAA TTGGCACACT
  TTGGTGGAGG AGAAAGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46949194	NES10807704	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30446613					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46949194	NES10807704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53894719 () rs orientation: forward

Symbol	Name	Function Class
Rr576762	regulatory region 576762	1805 bp distal
Rr576763	regulatory region 576763	1025 bp proximal