rs30448085 SNP Detail

Summary

• ID
  rs30448085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97778184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTGATC CAGTTCTGCC
  TAATCCTCAG ACAATGCACT TGATGGTAAT TGTGGTGTGT GTGTGTGTGT GTGTGGTCAT
  TTCCTTTTCC TAAATCAGGT TATTGGAACC ACTTCATGCT CTAATAGCAG ATGTATAGAA
  AGTTGGCCAG GCTCTCCTGG GGACTACCTA AGGGAACCTT TCCACATGAG TTGCCCAGTA
  R
  GATCCCTCCA TCTTTCTGTG GGCTCTGGGC CTTCCCTGAG TTGGGAGGTG CCCCTGAGGC
  AAGCAGGTCC TAACTGGGGT CTTGGGAATA TTATCTGAGT ATAGACGGGG CTCAGAGACT
  TGAAGTTGTA GGGTTTATGA CTGCTTCCCA CACTTACCCA CGTCCTTGGG GACCAAGGCT
  GGTTCTCCAA CATGACCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49136879	NES12471342	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30448085					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49136879	NES12471342	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97778184 () rs orientation: forward

Symbol	Name	Function Class
D13Mit259	DNA segment, Chr 13, Massachusetts Institute of Technology 259	103 bp distal
Gm61494	predicted gene, 61494	within coordinates