rs30448089 SNP Detail

Summary

• ID
  rs30448089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97777740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTTCAA GTGCTGGCAT
  TACAGTGCAC CACCGTGCTC TGCCTAGTGT CTTTTGTTTA GAGTATATGA GGATTTAAGA
  GACACTTAGG GGAGTGCCCT CATGATTTCA CTCCTCACTA GGGGGTCCCC ATTCCTAAAA
  CTCCTTCAGT GACTTGCACT TTAACTAAAA CCATTAAAGA CAGGTAGTAT CTGATGGAAC
  Y
  AACTAACACC CTTGATTTCT ATGTTGGTTT CTTCTTCACT GACAGGTACT GAAGAAAGGT
  GAGTTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTGTGTG TGTGTGTGTG TGTTTGTGTG
  TGCTTGTATT TTTGTATATG TACCTGCATG TATGCCCTAC ATGTGTGCAC GTGCATCTCT
  CTGTGTGTAC ATGTGTGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49136883	NES12471338	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30448089					SNP	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49136883	NES12471338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97777740 () rs orientation: forward

Symbol	Name	Function Class
D13Mit259	DNA segment, Chr 13, Massachusetts Institute of Technology 259	248 bp proximal
Gm61494	predicted gene, 61494	within coordinates