rs30449035 SNP Detail

Summary

• ID
  rs30449035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7553312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAAAAA TAAAAATAAG
  ATATAAAAAG AAAGAAATTT ATCAACAATG TATGCCTGGA TTGTGGTCTC TACTTACCAT
  GTACAACTCA ATGAAAATGA AGGCTCCTTA GAGGAAGACT TGGAGTCTCA GGTAGGAAAC
  AGATCAAAAC CAAGGGAATC ATCACTTCCT TTTAATTACA TATCAAAAGC CTTGGAAGAA
  Y
  TTTATGCTAG CCAAGAATGG CATAAGTTCA GCATCAAGTA ATGAGTATCT ATCTACCTTG
  CATTGAAATG TATCAACTCT GCTTAAATCT GTGAGGTCTT TGTCTTAAAA AATAGGTCAT
  ACCTTAAAAG CTCTAAATTG GCAATTTTTA AAGTTGGTAG ATCATGGATT TATTTCATAT
  TTCCTGAATT ATGTATCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45929510	mCV22684840	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss132951807	ENSMUSSNP4062421	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss321734085	CHEV_6_7503312	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30449035					SNP	T	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7553312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	1483 bp proximal
Rr146475	regulatory region 146475	1488 bp proximal
Tac1	tachykinin 1	1749 bp upstream
Tssr54885	transcription start site region 54885	1741 bp upstream