rs30449316 SNP Detail

Summary

• ID
  rs30449316
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97727406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT ACACATGTGC GTGCTCACGA
  W
  CGTGCTTGCA TACATGCATG GATCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49137094	NES12473200	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T	T	T	A		T
ss324497250	CHEV_13_98360853	CHEVERUD	SCREENING_POP	f	SNP							T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30449316					SNP	T	T	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49137094	NES12473200	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97727406 () rs orientation: forward

Symbol	Name	Function Class
D13Mit147	DNA segment, Chr 13, Massachusetts Institute of Technology 147	1666 bp distal
Gm2379	predicted gene 2379	within coordinates
Rr274324	regulatory region 274324	within coordinates
Rr285535	regulatory region 285535	1006 bp distal
Rr388933	regulatory region 388933	670 bp downstream
Tssr120789	transcription start site region 120789	923 bp downstream