rs30449318 SNP Detail

Summary

• ID
  rs30449318
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97725019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCAGCA GGTTGAGGCC
  AACCTCACCT CCCCTAAATG CAAACTTGTG GATTTGCTAC AGAGTCCCTC AAATTCTCAA
  AAAAAAAAAA GCCCTTCTTT TGACCTATCA TGCAGTACAG TCAGGAATGC TGTGGTTTGA
  ATCTCAAATA TCCTCTAGAA TCCATGTTCT GCACATATTG TGAGAATATG CTACTGCCTT
  R
  CGAGACTGTG GACCCTTCAC AGAATGGGGG CTATTTGTGA GATGCCTTCA GATTGGGCAG
  AGCTAGGTTG TTTAGGGTCT ACCTTCTTTA TTTTTTAAAA CTCTCTCTCT GCACCCCCCC
  CCACGCTCTT TCGTGCATGT AAGATCATAC CCAGGTGGCT GCAGCAAGTG CTTTTGCCTG
  CTGTGCCATC CTGCCAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49137096	NES12473406	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30449318					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49137096	NES12473406	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97725019 () rs orientation: forward

Symbol	Name	Function Class
D13Mit147	DNA segment, Chr 13, Massachusetts Institute of Technology 147	614 bp proximal
Gm2379	predicted gene 2379	within coordinates
Gm61499	predicted gene, 61499	396 bp upstream
Rr388932	regulatory region 388932	1703 bp downstream
Rr388933	regulatory region 388933	within coordinates
Tssr120789	transcription start site region 120789	1458 bp upstream
Tssr123601	transcription start site region 123601	389 bp upstream