rs30449319 SNP Detail

Summary

• ID
  rs30449319
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97724431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATAAAA TTCAAACAAG
  GCATCAAGAC ACTGTGTCAG AAACTTTAAA GAGTCAGATG AATCAGATGG TTGGGGAGGA
  AGGGAGGGAG GGAGGGAGGG AAAAGGGAGG GAGGGAGAGA GGGAGGGAGA GGAAGAACAG
  AGTGAGATCT CTGACTATGA GTGGGCTAGG AGCACTTTTC TTCCTGAAGG TGTGCAACTA
  K
  CTGCAGTTAC CAAAAGAAAT TCAGTACTTA TCAAATTAGT AGGCTTAGAA AGAAAACAAA
  AACAAAAACA AAAAAATACA AAATCAAATC AAAACAATAC AAACAAGCCC TCACTCTGAA
  CTGTGGATCA GGAGAGGTAG CGTCAGGTCC TGACTGGAAT GCAGCTGAGC TCAGAGCAGG
  CAGGAGACTG AGCTGGCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49137097	NES12473405	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30449319					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49137097	NES12473405	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97724431 () rs orientation: forward

Symbol	Name	Function Class
D13Mit147	DNA segment, Chr 13, Massachusetts Institute of Technology 147	1202 bp proximal
Gm2379	predicted gene 2379	within coordinates
Gm61499	predicted gene, 61499	within coordinates
Rr274323	regulatory region 274323	431 bp distal
Rr280768	regulatory region 280768	562 bp distal
Rr285535	regulatory region 285535	1770 bp proximal
Rr388932	regulatory region 388932	1115 bp downstream
Rr388933	regulatory region 388933	within coordinates
Tssr123601	transcription start site region 123601	154 bp downstream