rs30449517 SNP Detail

Summary

• ID
  rs30449517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123062287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTTGCATG GGCAGATAGG AAACAAATCA TAATTCTTTT
  GCCAGGCTTC AGAGCACCTC CTGTCTTGTA ACAAATGTTT TTTTGAAAGC CAGACATGGT
  R
  GCACACACCT TTAATCCCAG CATTGGGGAG TCAGAGGCAG GCAGATCTCT TTGAGTTCGA
  GGCTAGCCTG GTCTACAGAG TAAGTTCAGG ACAGCAAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45429149	mCV25366964	ABI	CRAMUS_MOUSE	f	SNP	G		A	G	A
ss135761740	ENSMUSSNP2969996	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss320918512	CHEV_3_122971556	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30449517					SNP	G	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123062287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13776	CpG island 13776	426 bp distal
Gm56815	predicted gene, 56815	1284 bp downstream
Gm66521	predicted gene, 66521	1221 bp upstream
Rr77168	regulatory region 77168	within coordinates
Sec24d	SEC24 homolog D, COPII coat complex component	within coordinates
Tssr31542	transcription start site region 31542	1436 bp downstream
Tssr31543	transcription start site region 31543	1417 bp downstream
Tssr31544	transcription start site region 31544	1138 bp downstream
Tssr31545	transcription start site region 31545	1054 bp upstream