rs30450178 SNP Detail

Summary

• ID
  rs30450178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100097280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTTGGTCA AATGTAGTGC CATCTGGCAA ACATTTTCCT
  TTCAGTAGAA AGAAACTGGA CTCCCTTGCC AAACATGGTG ATCTGACTCT GCGCATATGC
  R
  CTTTTAAAAT GCTCACGTCA TGGTTTATGG GTTGTTCATG GTTGTTCCTT TCCATATGGG
  CCTTGCTAGG ATTGGCACCC GGTTGCCTGC GATGCTAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss45430025	mCV23824937	ABI	CRAMUS_MOUSE	f	SNP		G	A				G	A
ss46800687	NES10745460	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A		A		A	G
ss135538223	ENSMUSSNP6240283	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
ss320848248	CHEV_3_99993887	CHEVERUD	SCREENING_POP	f	SNP									A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs30450178					SNP	G	G	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46800687	NES10745460	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100097280 () rs orientation: forward

Symbol	Name	Function Class
Gdap2	ganglioside-induced differentiation-associated-protein 2	within coordinates
Rr64421	regulatory region 64421	within coordinates
Rr69692	regulatory region 69692	within coordinates
Rr82369	regulatory region 82369	123 bp distal