rs30450797 SNP Detail

Summary

• ID
  rs30450797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124193772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCGAGCGGGC CGGGGCGGCG TCAGGGGTTC CGCGAGGAAG GGGCCCGTGC GCACTGGATG
  TCATCCCCTG GCCTCAGGGT TTACTCGCGG GCTCGAGGTC TCGGGGCCGG TGGAGGGGAG
  GCGGCGGGGG TGGAGGATTT TACTCACAAG CAACCCCCGG ACGCGCACCT CATATGATTA
  TCAGTCCTTT TTGTGTCTTA ATGATACTGT TTTGTTGAAG TCATCCAATA CCTCTGACAC
  TTTTCCACAA AGATTTCTGA ACCCCGAGTG CTGCTTTTGT TTTATATAAA CTGGTAGAAA
  R
  AAGATTGTCC TGAAGACAAA CCTTACTTAT GTCATCAGTA TGGAAAATTT GTGCTGGTCC
  CCAGCTAGAA GCTTTACCTC TAATGTCTAG AATTCAAGTT GCTAGAAGGT ACCCTACATG
  GTACCAGAAG AAAGGCTAAA GGGAATACAG ATTAATGTAT CTTCTTACAA AATTGTCCCT
  CATCCAAGCC AAAAAGAAAT GTGAAGAGGT GGTAGGAAAG ATCTTGAGAG TCAAAAGATG
  AGGAAGTTGG CTGGAAACAC AAATATTCTA GAAAGGGAAT GGGTAGACCA AAATGTCTTA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46408999	mCV24426980	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss134041073	ENSMUSSNP2001818	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30450797					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124193772 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	1353 bp downstream
Gm20783	predicted gene, 20783	1251 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	1640 bp upstream
Tssr3101	transcription start site region 3101	1899 bp upstream
Tssr3102	transcription start site region 3102	1756 bp upstream
Tssr3103	transcription start site region 3103	1714 bp upstream
Tssr3104	transcription start site region 3104	1622 bp upstream
Tssr3105	transcription start site region 3105	1512 bp upstream