rs30450834 SNP Detail

Summary

• ID
  rs30450834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:40990242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGCCTT TGAATTCACT
  TTCCAGTAAA ACCACCATTG TACCACCTCA AATGAAAAAC AGATTAAGTT AAAGACCATC
  AATTAATGCC AAAGTCAGAA TAACGTATCA ACAACAGCAC AGCATATCAG AGTCTCATCC
  CAGAGGCTTC TGGCTGGCTG CAGAGCCAAA GTTTACAGAG CTGAGAGCTG ATGGCTGGTA
  Y
  CTTAAATCCC AAAACCAAGC CTAGCACTAA GCATCCTGAT AAGTAACTAA CCTAAGTGGA
  GGACTCACTC TCAGACTGCT TAACGTTCAG ATCTAACATT CCAGTTCCCA TGGAGTGAAC
  CTATAGTTAA TAATCCAAAT TGAGGGCATC TGTGGAGTGT GAGGGTTGCA ATTAACCAGC
  ACGCTAATAC TGCAGTGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39693329	mCV23121540	ABI	CRAMUS_MOUSE	f	SNP		C					T	T
ss50828930	NES13537306	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T		T	T	T			T	C		C
ss146399246	ENSMUSSNP6937813	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T				C
ss325808747	CHEV_19_41076289	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30450834					SNP	T	C	T	C	T	T	T	T	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828930	NES13537306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:40990242 () rs orientation: forward

Symbol	Name	Function Class
Gm59161	predicted gene, 59161	within coordinates
Rr547536	regulatory region 547536	1772 bp distal
Rr547537	regulatory region 547537	1990 bp distal
Tssr159239	transcription start site region 159239	1312 bp upstream