rs30450931 SNP Detail

Summary

• ID
  rs30450931
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152601093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAACTG ACTTAGAGAC
  CAGGAAACTT GGGTACGTTT TAAAGAAAGT CTTAGCTATT CCATTTAGGT TTTAAAAACC
  AAACCCCAAG ACTGCTCACA TCACTAACTG AGGGAGAGAA AGAGTAGAAA ACTCAGCTCC
  ATGACAAGAA AATTCTGAGG AGTCAGAGGA GGGAAATGGG ACACTGGAAG CCACATTGTT
  Y
  ACTTTATACA TGAACAGAAA CTGAGATAAA AATGGACAAC TTCCTAGGAC AATGTAATTT
  ATCAAATATA ATCCAGATTC TAAAGAAACC TAATGGTCTA CATTTTATAG GAAAACAAAA
  CTAAAGATGT AAAGAACCAT CTGTTCCCGG AAAAGATGAG CACAGGACAC AGGCTCAGCC
  TCTGAGGAGC CCTCCAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45430705	mCV22357382	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss136104540	ENSMUSSNP3505732	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss321029099	CHEV_3_152558420	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30450931					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152601093 () rs orientation: forward

Symbol	Name	Function Class
Gm46830	predicted gene, 46830	317 bp upstream
Rr82809	regulatory region 82809	90 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates