rs30451208 SNP Detail

Summary

• ID
  rs30451208
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:61212514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATACGTCTC AGGACAGCCA GCCACCTCCA TCTTGATGAG GGAGATTAGT CAGAGGACAA
  GATGGCTGCC ATCCACATGT CTGTCGCCTT TCATCTTTGT GAGGTCAATG TGCAACCGAG
  TGACAGAACA AGGAAGTAGA CATGCAGACA ACAGACATGC AGGTGCACTA CCTCCCTTCT
  GTTTTTGGAT AAGAGACACA CAATTTTTAT TATTTACAGT AAGCCTTAAA CAGCACTCTG
  ACAGCTGGGC AGATATCTAC CTTCTATGTG ATTAGAATTT CCTTTTTTCT TTTCTTTTTT
  W
  TTTTTTTTAA TTCTCAGGAC CTGCATGGTA GCTTCTCCTA GGTTCTGGTG CCCTCTTCTG
  GCATGCAGTC ATATAAGGCA GCAGATAGAG CACGCACACA CACACACACA CATTTACATT
  GAAAACTAAT AGTAATAATA AATAAATAAG TAATAATAAG AAAAAAAGAT CCTAGCTTCG
  GCCGGGCTGT GTGGGTGGCA GAGGCAGGCA GGCAGGCAGA GAGGACCTCT GTGAGTTTGA
  GGCTACCCAG GCCTACACTG AAAGTTCCAG GCAGGGATGC CGGGGCTACA CCAAGAGAAA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39694471	mCV23487477	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30451208					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61212514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11146	CpG island 11146	835 bp proximal
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	within coordinates
Gm56644	predicted gene, 56644	within coordinates
Rr406075	regulatory region 406075	205 bp upstream
Rr406076	regulatory region 406076	1856 bp upstream
Rr550838	regulatory region 550838	within coordinates
Rr550839	regulatory region 550839	44 bp proximal
Tssr157374	transcription start site region 157374	321 bp upstream
Tssr157375	transcription start site region 157375	395 bp upstream
Tssr157376	transcription start site region 157376	437 bp upstream
Tssr157377	transcription start site region 157377	476 bp upstream
Tssr157378	transcription start site region 157378	597 bp upstream
Tssr157379	transcription start site region 157379	630 bp upstream
Tssr160090	transcription start site region 160090	511 bp downstream
Tssr160091	transcription start site region 160091	533 bp downstream
Tssr160092	transcription start site region 160092	660 bp downstream
Tssr160093	transcription start site region 160093	762 bp downstream
Tssr160094	transcription start site region 160094	825 bp downstream
Tssr160095	transcription start site region 160095	911 bp downstream
Tssr160096	transcription start site region 160096	1332 bp downstream
Tssr160097	transcription start site region 160097	1523 bp downstream
Tssr160098	transcription start site region 160098	2000 bp downstream