rs30451243 SNP Detail

Summary

• ID
  rs30451243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127201776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACATT TATTTCCAGC
  CTCTGAAAGA AACGGAGTAT AATGTATCGG GAGGAACAGT AAGATGGCAT TCCATCTCTG
  TTCTTGTGCT CCAAAAAGGC CACACCTAAG ATGCTGGAGA GCTGAGGCTC ATGCCTGAGG
  CACGAGTGCA GCTCTGCACT CCTGTCATCC ATAAAACAGG AAACAAAACA ACAGTGCTTA
  R
  AAATCTTCAC TTCTCCCTCT GCTGCACCTT AGTTGGGCTT TGGAAGCAGA AAAGAGAATC
  CGTTTGCTGG GAAACAGAGT GAGAACTCCA TCATTTTTCC TCTGCTGTCT GTGTTCTGCC
  AGCTGACGGT ACCTAGTGCA AAATTTAACC ATTAAAGGGG GGCAATCTCC TAGCAACCCC
  ACTGTTGGGC AAAACTAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45430429	mCV23997522	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss135862623	ENSMUSSNP3621699	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320953851	CHEV_3_127111045	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30451243					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127201776 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	560 bp proximal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	829 bp distal
Rr584773	regulatory region 584773	within coordinates
Rr584774	regulatory region 584774	830 bp proximal
Tssr35571	transcription start site region 35571	753 bp downstream
Tssr35572	transcription start site region 35572	810 bp downstream
Tssr35573	transcription start site region 35573	859 bp downstream
Tssr35574	transcription start site region 35574	887 bp downstream
Tssr35575	transcription start site region 35575	917 bp downstream