rs30452403 SNP Detail

Summary

• ID
  rs30452403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38940129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCGA GCAGCTGCCC CGCACCTCCG
  Y
  GCCCCCATCG CCCGCGGGGA CCGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss45431207	mCV25414934	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss134846135	ENSMUSSNP1610312	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320724095	CHEV_3_38784902	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs30452403					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38940129 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	within coordinates
Fat4	FAT atypical cadherin 4	mRNA-UTR
Gm56780	predicted gene, 56780	within coordinates
Gm65329	predicted gene, 65329	434 bp upstream
Rr575717	regulatory region 575717	445 bp distal
Rr575718	regulatory region 575718	1486 bp distal
Rr575719	regulatory region 575719	281 bp distal
Rr575720	regulatory region 575720	122 bp proximal
Rr575721	regulatory region 575721	470 bp proximal
Rr575722	regulatory region 575722	1782 bp proximal
Rr575723	regulatory region 575723	1903 bp proximal
Tssr28930	transcription start site region 28930	649 bp downstream
Tssr28931	transcription start site region 28931	278 bp downstream
Tssr28932	transcription start site region 28932	252 bp downstream
Tssr28933	transcription start site region 28933	216 bp downstream
Tssr28934	transcription start site region 28934	126 bp downstream
Tssr28935	transcription start site region 28935	93 bp downstream
Tssr28936	transcription start site region 28936	75 bp downstream