rs30452728 SNP Detail

Summary

• ID
  rs30452728
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70442519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGGGGA GGGGAGGCTG
  AGGTGCAGCC CACCAGCTGG ATTCAATTAA AGCTCTTACC AAAAAGCTAA CCATACAAAC
  ACACACCCGT TCCCGCCACC CGTTCCCGCA GCCCTCACCG CTGCTGCCTG CCGACTCTCG
  GACTTCCTCC AGGGGAAAGT GAAGCCAGGC AGACTGATGA CCCAGGAAGC CTGGGCACAC
  S
  GGCTGTGTGC TACCCCTCCC TGCCCGGCTG AGGGCTTGAG GCCAAACTGC CTTCGGCATC
  AGCAGTTGCA CCCATCAGCT GACAGGCCTT CCTTCCCTAA TGTCACTGTG TCCCACCCTC
  CCAGCAAATC CAGAAGTGTC CTCTCTAGGG AAAAAGGACC AGTTCTCCAT CACCACCTTG
  TTTCAGGAGC TACTGACCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39186956	mCV24337826	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss139681792	ENSMUSSNP6817793	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30452728					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70442519 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6688	CpG island 6688			557 bp proximal
Gm26908	predicted gene, 26908			within coordinates
Gm49417	predicted gene, 49417			254 bp upstream
Rr494880	regulatory region 494880			940 bp distal
Rr494881	regulatory region 494881			within coordinates
Rr494882	regulatory region 494882			167 bp proximal
Rr494883	regulatory region 494883			265 bp proximal
Rr494884	regulatory region 494884			942 bp proximal
Rr494885	regulatory region 494885			1078 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			1663 bp downstream
Tssr126404	transcription start site region 126404			101 bp upstream
Tssr126405	transcription start site region 126405			155 bp upstream
Tssr126406	transcription start site region 126406			174 bp upstream
Tssr129550	transcription start site region 129550			1617 bp upstream
Tssr129551	transcription start site region 129551			1604 bp upstream
Tssr129552	transcription start site region 129552			1590 bp upstream
Tssr129553	transcription start site region 129553			756 bp downstream
Tssr129554	transcription start site region 129554			803 bp downstream
Tssr129555	transcription start site region 129555			915 bp downstream
Tssr129556	transcription start site region 129556			968 bp downstream
Tssr129557	transcription start site region 129557			1012 bp downstream
Tssr129558	transcription start site region 129558			1041 bp downstream