rs30452848 SNP Detail

Summary

• ID
  rs30452848
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26385193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG GCAGGAGTCA GTGGCGAACC
  S
  TTTAAACCTT GGGGTGGACT ACCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45429653	mCV22681620	ABI	CRAMUS_MOUSE	f	SNP		C	G					G		C
ss51444672	NES14435652	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	G		G	C	C	G		G	C	C	G		G
ss134693989	ENSMUSSNP7008216	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							C
ss320687275	CHEV_3_26229966	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30452848					SNP	C	C	G	G	G	C	G	G	G	C	C	G	C	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444672	NES14435652	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26385193 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	106 bp upstream
Cpgi13015	CpG island 13015	250 bp proximal
Nlgn1	neuroligin 1	within coordinates
Rr77454	regulatory region 77454	within coordinates
Tssr32829	transcription start site region 32829	within coordinates
Tssr32830	transcription start site region 32830	456 bp downstream
Tssr32831	transcription start site region 32831	762 bp downstream
Tssr32832	transcription start site region 32832	786 bp downstream
Tssr32833	transcription start site region 32833	810 bp downstream
Tssr32834	transcription start site region 32834	860 bp downstream
Tssr32835	transcription start site region 32835	890 bp downstream