rs30452930 SNP Detail

Summary

• ID
  rs30452930
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:62376116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGATTTAC TTTCCTGGAT
  ACACTTTCCC ATATTCTCCA ATGAAGATGG TTCTTAAAAA ATCAGAATAA AGATGCTGTT
  TAACATATAG GATTATTACA AATATATAGA TATAAAACAT AATTATAGTT ACTGAAGAAT
  AAATATAAGA TCAGTGTTGA AAATGGAAGG AAATATGCCA CCATTTACTT AGCCTGGGTG
  M
  AGATACCAAA TAATAATTTT AGAGTAGACT TTGTTTTACA AATGCAGAAA AATACACTTT
  GCAATTAATT GACTTAAAAT TATTACAGCT CTTTTTCCAG GTCAATTAAT TAGGAAGGTA
  CCATGTGCAT GTACCTAATG CTCTTGAAAC AGCGGTAGAT CTCATAAGTT TCTGTTACAG
  TGGTTTTTTC CAGTTTGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45431025	mCV22847962	ABI	CRAMUS_MOUSE	f	SNP		A				C		C
ss51531095	NES14690713	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C		C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30452930					SNP	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51531095	NES14690713	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62376116 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dhx36	DEAH-box helicase 36			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr577527	regulatory region 577527			1684 bp proximal