rs30454458 SNP Detail

Summary

• ID
  rs30454458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46305900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT TGGTGAGGCA GGTCCACCTT
  R
  GCCCTCCCCC ACAGCCCATA CCCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39694224	mCV25010756	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss146451675	ENSMUSSNP6852434	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs30454458					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46305900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10993	CpG island 10993	within coordinates
Psd	pleckstrin and Sec7 domain containing	within coordinates
Rr548704	regulatory region 548704	620 bp proximal
Tssr159621	transcription start site region 159621	496 bp downstream
Tssr159622	transcription start site region 159622	501 bp downstream
Tssr159623	transcription start site region 159623	521 bp downstream
Tssr159624	transcription start site region 159624	605 bp downstream
Tssr159625	transcription start site region 159625	662 bp downstream