rs30455566 SNP Detail

Summary

• ID
  rs30455566
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80819605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT ATTTATAGTC ATGGTGAGAC
  W
  CAGTTCAAGT AAAGATATAG AGAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45431708	mCV24542483	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss135386138	ENSMUSSNP2158250	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs30455566					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80819605 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	772 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	240 bp upstream
Gm65109	predicted gene, 65109	923 bp upstream
Rr578673	regulatory region 578673	509 bp proximal
Rr578674	regulatory region 578674	934 bp proximal
Rr578675	regulatory region 578675	1220 bp proximal
Tssr33773	transcription start site region 33773	1244 bp downstream