rs30456208 SNP Detail

Summary

• ID
  rs30456208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137046574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTATGAG TTGAGAAGAG AGAAGAAATG CAATTCCTTG
  TGGATTTTGT ACTCAAATCC AGACCTTGGG AAGTCACAGC CTTTTCAGCC GACCTGGGGG
  R
  CTACTTGGTG AGGTCTCTTT ACAGCTTCTC TAAAATGCAC TTTCAAAACA AAAGTTAGAA
  AGCTCTCTGG CCCTTTCTCA AGAAGGGTCT CTTCCTGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45432601	mCV23606870	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135939706	ENSMUSSNP807656	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G	A
ss320975392	CHEV_3_137003777	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30456208					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137046574 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	250 bp upstream
Rr585936	regulatory region 585936	within coordinates
Tssr31897	transcription start site region 31897	219 bp upstream
Tssr31898	transcription start site region 31898	263 bp upstream
Tssr31899	transcription start site region 31899	290 bp upstream
Tssr31900	transcription start site region 31900	334 bp upstream
Tssr31901	transcription start site region 31901	366 bp upstream
Tssr31902	transcription start site region 31902	399 bp upstream