rs30456209 SNP Detail

Summary

• ID
  rs30456209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107376870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGAGAGGAG GAGAGAGAGT GGAGTCTCTG CTAGGGCCTG GCTTTCCTGT TTTCTAATTC
  TGCTCAGGAC TAGGCACGGG GCCAGCTAGG GGGTGTTGTC AGGTGAGGGG GCCGATGGTG
  GGACCCCAAA GCTCATTTCC CTCTCACCTT AAATACTATG ACAGGTGGGA CCAAGAAGGC
  TAGAAGTGAG AGAAGGTGTG TGGAACTGAG GAATAAGAGA TGGCAGGCTG AGGGTGGGGG
  ACCTCTCAGG CTAGGGAGGG AGGTATCCAG GAGGCTTTAG GAGCAAGTGG TGGACATCTG
  R
  GCCTAGGCTG TCGTCCCTCT CAGGACTGAG GGAAATTTAG GCCACAACAA TGACCCAGGA
  ACCTCTGTCA GGTGCCCAGG TCTGTTCCTG CTGACCAGAA CTTTCAAAGA TAGAAACAGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC ATGGATGTTG
  TATGTAAGAC CACCACCCCT GGCTCCAGGT TGGAAGGAGA AGATTGAGAA ATGACTAAAC
  CCTAGCTAAG GTGACCCCAT CCATGCACCC ATCCATCTGT CCATCCCAAC CGGCCAACCA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45432602	mCV24920041	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss135584342	ENSMUSSNP534025	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30456209					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107376870 () rs orientation: forward

Symbol	Name	Function Class
D3Mit103	DNA segment, Chr 3, Massachusetts Institute of Technology 103	66 bp proximal
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17	within coordinates