rs30456394 SNP Detail

Summary

• ID
  rs30456394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:102125999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCAAGTG GAGGCCTTTT
  CTTATGAACT TGTTGGCTCA GAGTAAATTT AGAAAATGTT GATATATCGC TTCTCGGCCT
  TTTGGCTAAG ATCAAGTGTA GAAAATGTTG ATATTATTTG ACCTTAGTTC GTTGACATAG
  GAGACGGACT AAAAGTTGAT ATACTTAAAA GTTGATATTT AAGAAGCAGC TAAGGGCAGC
  Y
  GGTTCAGATT TGCCCATTTG CAGTTAAACT CAAGTTAAAG ACGTCGAGTA CTTAGAAGCG
  AACACCGCTG GAGAGAATGA CCCTTTTTAA TGTTTGGTTT TTTGGTTTCT TAGACTCTTT
  CAAAAGATCT ATGGTGAGAA TGGGTAAGTG TATGGTTCCC ATTAAAAATA ATCCCTCCTA
  TCTGTTTGTC TCCTCTGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39187642	mCV22290629	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss49352254	NES12571129	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C		T	T	C	T	C	C	C
ss146740367	ENSMUSSNP3529391	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30456394					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49352254	NES12571129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:102125999 () rs orientation: forward

Symbol	Name	Function Class
Gm52170	predicted gene, 52170	2 bp downstream
Lmo7	LIM domain only 7	within coordinates
Tssr126931	transcription start site region 126931	1667 bp downstream
Tssr126932	transcription start site region 126932	1083 bp downstream