rs30456593 SNP Detail

Summary

• ID
  rs30456593
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51107485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGA CATTCTGTGT ATACACTAGT
  W
  TGTATGTATA CCTGCCTCCA CTCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39187195	mCV25390489	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss139469923	ENSMUSSNP4787875	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss324619655	CHEV_14_51489703	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30456593					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51107485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6408	CpG island 6408	249 bp proximal
Gm26782	predicted gene, 26782	224 bp upstream
Rr404075	regulatory region 404075	486 bp upstream
Rr491714	regulatory region 491714	within coordinates
Rr491715	regulatory region 491715	346 bp proximal
Rr491716	regulatory region 491716	522 bp proximal
Rr491717	regulatory region 491717	1453 bp proximal
Tep1	telomerase associated protein 1	within coordinates
Tssr125373	transcription start site region 125373	327 bp upstream
Tssr128379	transcription start site region 128379	673 bp upstream
Tssr128380	transcription start site region 128380	471 bp downstream
Tssr128381	transcription start site region 128381	529 bp downstream