rs30457306 SNP Detail

Summary

• ID
  rs30457306
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10183140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGG CCAGGCGATG GTGGTGCATG
  M
  CTTTAATCCC AGCATTCAGA AGGCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39695119	mCV23259620	ABI	CRAMUS_MOUSE	f	SNP	A		C	C
ss146041365	ENSMUSSNP6496143	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C	C
ss325720138	CHEV_19_10280266	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30457306					SNP	A	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10183140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10601	CpG island 10601	1303 bp distal
Fen1	flap structure specific endonuclease 1	1607 bp upstream
Rr356596	regulatory region 356596	661 bp proximal
Rr361277	regulatory region 361277	1705 bp proximal
Rr362959	regulatory region 362959	339 bp distal
Rr405855	regulatory region 405855	1421 bp downstream
Tmem258	transmembrane protein 258	within coordinates
Tssr155037	transcription start site region 155037	1585 bp downstream
Tssr155038	transcription start site region 155038	1539 bp downstream
Tssr155039	transcription start site region 155039	1527 bp downstream
Tssr155040	transcription start site region 155040	684 bp upstream
Tssr158165	transcription start site region 158165	1906 bp upstream
Tssr158166	transcription start site region 158166	1828 bp upstream
Tssr158167	transcription start site region 158167	1363 bp upstream