rs30457562 SNP Detail

Summary

• ID
  rs30457562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53016986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAACTTTG GCAAATGTCT TCTCTTCCCC TCTCATGCCT
  GGTGCTGCTC TTTAATCCAT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  R
  TGTGTGTGTG TGGCTGCTGT CTTAAATCAT GATGTTTGAG ACCAAAGGAC CATTGGGGAT
  CTCACCTTTG TTAAGAACTT GATAGGTGCT GAAGAGATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45432029	mCV24467144	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss135181033	ENSMUSSNP1683948	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320766794	CHEV_3_52913487	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30457562					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53016986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43803	predicted gene 43803			706 bp downstream
Gm43804	predicted gene 43804			103 bp upstream
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr374965	regulatory region 374965			within coordinates
Rr576645	regulatory region 576645			679 bp distal
Rr576646	regulatory region 576646			211 bp distal
Rr576647	regulatory region 576647			392 bp proximal