rs30458102 SNP Detail

Summary

• ID
  rs30458102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26386711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACA CAGTCACCCT CCCCAGCACC
  Y
  GATCCCTCCT CCTGGGCCCC GGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45432894	mCV22681634	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss134694010	ENSMUSSNP2592770	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320687281	CHEV_3_26231484	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30458102					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26386711 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A830092H15Rik	RIKEN cDNA A830092H15 gene			within coordinates
Nlgn1	neuroligin 1			Intron
				mRNA-UTR
Rr574316	regulatory region 574316			1334 bp distal
Rr574317	regulatory region 574317			313 bp distal
Rr574318	regulatory region 574318			748 bp distal
Rr574319	regulatory region 574319			642 bp distal
Rr574320	regulatory region 574320			within coordinates
Rr574321	regulatory region 574321			1389 bp proximal
Tssr32829	transcription start site region 32829			1508 bp upstream
Tssr32830	transcription start site region 32830			1048 bp upstream
Tssr32831	transcription start site region 32831			742 bp upstream
Tssr32832	transcription start site region 32832			713 bp upstream
Tssr32833	transcription start site region 32833			661 bp upstream
Tssr32834	transcription start site region 32834			645 bp upstream
Tssr32835	transcription start site region 32835			619 bp upstream