rs30458228 SNP Detail

Summary

• ID
  rs30458228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89097193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTA TGTGGGTGGG TTCTGGGAAT
  Y
  AAACTAGGGT GACCAGGTTT GCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45433089	mCV24884005	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss135473831	ENSMUSSNP6936798	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30458228					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89097193 () rs orientation: forward

Symbol	Name	Function Class
Entrep3	endosomal transmembrane epsin interactor 3	591 bp downstream
Rr367465	regulatory region 367465	618 bp upstream
Rr579970	regulatory region 579970	895 bp distal
Rr579971	regulatory region 579971	476 bp proximal
Tssr30058	transcription start site region 30058	1990 bp downstream
Tssr30059	transcription start site region 30059	1921 bp downstream
Tssr30060	transcription start site region 30060	1889 bp downstream
Tssr30061	transcription start site region 30061	1558 bp downstream
Tssr30062	transcription start site region 30062	1520 bp downstream
Tssr30063	transcription start site region 30063	1476 bp downstream
Tssr34094	transcription start site region 34094	1249 bp upstream