rs30460390 SNP Detail

Summary

• ID
  rs30460390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72534664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG GGCAGGACAG AGGCAGCTGG
  Y
  TGTGATGAGC CTGTCTGGCT TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45930113	mCV24951534	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss51696114	NES14820946	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	C	C	T		T	T		T
ss133285592	ENSMUSSNP5068666	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss321822115	CHEV_6_72507675	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30460390					SNP	T	T	T	T	T	C	C	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51696114	NES14820946	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72534664 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	1878 bp downstream
Tssr57143	transcription start site region 57143	1852 bp downstream
Tssr57144	transcription start site region 57144	1563 bp downstream
Tssr57145	transcription start site region 57145	1523 bp downstream
Tssr57146	transcription start site region 57146	1504 bp downstream
Tssr57147	transcription start site region 57147	338 bp downstream
Tssr57148	transcription start site region 57148	992 bp upstream
Tssr57149	transcription start site region 57149	1085 bp upstream
Tssr61469	transcription start site region 61469	108 bp downstream