rs30460781 SNP Detail

Summary

• ID
  rs30460781
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180535443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTCAGCTGA CAGGTAGTTG TGAAGCCACC TGGAGAGGTG CCAGTAGAGA ATTAGCCATC
  AGCCACACCT AGGGGTGAGG GTGCCGGAGC CTGGAGGGGC CCTTATCAGG GATGAAATCT
  GTCATTTCCC TGAGAAGGGG GCCTGAGTCC AAAGCTTGGG GGCCTTAAAA GTGGTCCTGA
  ATGAGCCCCA CATTCACCCG TGATCTTCTG TTTTCAGGGA TCAGAGTCTG AGCACAGCTT
  CTCCAAACTC AGAGGCATGG TGGGATCCTG GGACTGTGTG TGTGTGTGTG TGTGTGTGTA
  W
  GAGAGACAGA CAGACAGACA GACAGACAGA CAGACAGATA GAGAGACAGG CAGAAACAGA
  GACAGAGTCA GAGAGTGACA AGGAAGCCCT GTGTGTGACC TTTCTACTTA GTTCTGAGTT
  TGGTTTTACT CACCCCCTCC CCTTTGATAA TTATTAAACA AGCAACCACA GAGCTGGGCT
  AGGGAGATGA CTCGTGGGTA AAGTTCTTGT AATGTAATAC TAACCCCGAC AACCTGAGTT
  CGAGTCTATA CCCCATGATC CCATGTGCAA AGCTGGAGAG CAATAACCCA GGCTCTCCTA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss44930530	mCV24577346	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30460781					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180535443 () rs orientation: forward

Symbol	Name	Function Class
Rr424548	regulatory region 424548	46 bp proximal
Rr424549	regulatory region 424549	1118 bp proximal