rs30461319 SNP Detail

Summary

• ID
  rs30461319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151853963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGGCAC TCAAGGCCTT
  CTTCTGGCCC CTTCCAGCAC CAGACACATG CACAGTGCAA AGCGTTCGTG CAGGCAAAAC
  ACCAATACGT AAACAAAACA GGAAAAATAA AACTGAAATT AAAAAGGTCA TGGGCCAGCA
  AGATAGTTCA GCAAGTCAGA GCACTTGCCA TACAAGCCTC GTAGCCTGAG TTTCATTCCT
  Y
  TGACCTTCAT ATGTGTACAC ACACATACAC ACACATGTAC TCATGCACAC ATACATGCAT
  ACATGCATAG ACACATGCGC ACACACACAA ACACATGTAC AAACACACAC ACACACACGC
  CACAACCCAA TAGTTAAGAC ATTTACAAAG TATAAATGTG ACATCTGAAG AAAAAGCAAG
  CTGGACGCGG TGGTCCACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45433320	mCV24210675	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss136101102	ENSMUSSNP2646104	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss321028237	CHEV_3_151811290	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30461319					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151853963 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587467	regulatory region 587467			314 bp distal
Rr587468	regulatory region 587468			1063 bp proximal
Tssr1099	transcription start site region 1099			940 bp downstream