rs30462281 SNP Detail

Summary

• ID
  rs30462281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97993539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT ATCTCCCAAA CATATTACAC
  R
  TTGCTCAGCA TTATATTTCT GTTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45930135	mCV23116512	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss60914400	NES16220529	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	A		G	G	G	A	G	A	G	G	G
ss133422958	ENSMUSSNP370166	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30462281					SNP	A	G	A	G	G	A	A	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60914400	NES16220529	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97993539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17778	CpG island 17778	1404 bp proximal
Mitf	melanogenesis associated transcription factor	within coordinates
Rr145432	regulatory region 145432	391 bp distal
Tssr57949	transcription start site region 57949	1862 bp upstream
Tssr57950	transcription start site region 57950	1909 bp upstream