rs30462392 SNP Detail

Summary

• ID
  rs30462392
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50912329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCATTCT GAGATATTCT
  GAGATAATCT TTAAAAAAAA AAGGTTCAGA ACTGGAAAGT TTGAGAATGC TACATTAAAG
  AAGCTTGGGA AGCCCGGCGT GAGGGCTCCT CTTCTTAAGT CCTTACCATT GTAGCCGATT
  AAAGGCTCCT GGGTACCAAA GAAATCTGAC TGACTCTGTT CAATAAAGCA TTTTCCAAGC
  K
  AATTTGATGC AAAGGTATCT CTTCTATTCA TGTACTAACA CTCCTCAGTG TTCATTAGCA
  GCAAGCAGCC TTTGGAAAGC CTCTGGTTTA ACCTAGAAGA TGAACCGTCA GCACCTCTGG
  GAATCCCTCC ACCTTGTGTG CTGCTCTTGT GGGCTCCAGC TTGCATTACA GGGGCCTTTC
  AATGATTGAG TTTGTGACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45932125	mCV23306512	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss133185755	ENSMUSSNP5585087	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30462392					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50912329 () rs orientation: forward

Symbol	Name	Function Class
Gm31686	predicted gene, 31686	within coordinates
Gm67430	predicted gene, 67430	3 bp downstream
Rr543	regulatory region 543	within coordinates
Rr399654	regulatory region 399654	1784 bp upstream
Rr630096	regulatory region 630096	1497 bp distal
Rr630097	regulatory region 630097	972 bp distal
Rr630098	regulatory region 630098	711 bp distal
Rr630099	regulatory region 630099	1739 bp proximal
Rr630100	regulatory region 630100	1911 bp proximal
Rr630101	regulatory region 630101	1956 bp proximal