rs30463062 SNP Detail

Summary

• ID
  rs30463062
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134808973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAGAAA GGGAGAGTTC
  TGAAAGTTTT CCAGGAAATA TTTTTCCAGT CTTTGCTACC TTGATCTTTC AGTGTTGATT
  CTGAAATGAA GTCTGCAAAC TATATCCATT CTCCTCCCAA CATCTCACGG ATACTGAAAG
  AATGTAGTAG TCTTCTTTCT CACCTGGAGA CTTGCACATA CTTTTACAGT TGTATAATAT
  M
  TAATTTTCAG TTATAGTCTT TTCCAGACCT TTGGTATATT CAACAGCTTT CTTAAGATCT
  CTAGTAGTTC CAACCAAAGT ACATAGAATT TTAAAATACT TTACTTACCA AAAGATCACA
  TACAGTTGTT GGTTTGTTTG TTTTTGAGGG GTGTTTGTTT TCAGAAAGAG TCTCTTGTAG
  CTTAGGTGGG CTTCCCAATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45931836	mCV24013564	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss133787622	ENSMUSSNP2112290	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30463062					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134808973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	1367 bp distal
Crebl2	cAMP responsive element binding protein-like 2	within coordinates
Gm67917	predicted gene, 67917	1915 bp upstream
Rr368197	regulatory region 368197	1746 bp downstream
Rr639728	regulatory region 639728	1926 bp distal
Rr639729	regulatory region 639729	1745 bp distal
Rr639730	regulatory region 639730	584 bp distal
Rr639731	regulatory region 639731	1528 bp distal
Tssr59250	transcription start site region 59250	1831 bp downstream
Tssr59251	transcription start site region 59251	1740 bp downstream
Tssr59252	transcription start site region 59252	1673 bp downstream
Tssr59253	transcription start site region 59253	1236 bp downstream
Tssr59254	transcription start site region 59254	974 bp downstream