rs30463409 SNP Detail

Summary

• ID
  rs30463409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72289617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTG ATTAGGTGGG AGGGGCAAGT
  Y
  CATGATGGGA TGGGCAGCTG GGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45932132	mCV25198407	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss133283814	ENSMUSSNP5872852	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss321821423	CHEV_6_72262628	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30463409					SNP	C	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72289617 () rs orientation: forward

Symbol	Name	Function Class
Gm67669	predicted gene, 67669	within coordinates
Rr632128	regulatory region 632128	669 bp proximal
Sftpb	surfactant associated protein B	within coordinates
Tssr1886	transcription start site region 1886	1920 bp upstream
Tssr57098	transcription start site region 57098	1988 bp downstream
Tssr57099	transcription start site region 57099	1887 bp downstream
Tssr57100	transcription start site region 57100	232 bp upstream
Tssr57101	transcription start site region 57101	974 bp upstream
Tssr57102	transcription start site region 57102	1065 bp upstream
Tssr57103	transcription start site region 57103	1156 bp upstream
Tssr57104	transcription start site region 57104	1349 bp upstream
Tssr57105	transcription start site region 57105	1547 bp upstream
Tssr57106	transcription start site region 57106	1648 bp upstream
Tssr57107	transcription start site region 57107	1748 bp upstream
Tssr57108	transcription start site region 57108	1790 bp upstream
Tssr57109	transcription start site region 57109	1841 bp upstream
Tssr57110	transcription start site region 57110	1877 bp upstream
Tssr57111	transcription start site region 57111	1893 bp upstream
Tssr57112	transcription start site region 57112	1963 bp upstream
Tssr61420	transcription start site region 61420	1854 bp upstream
Tssr61421	transcription start site region 61421	1407 bp downstream
Tssr61422	transcription start site region 61422	1981 bp downstream