rs30464022 SNP Detail

Summary

• ID
  rs30464022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145726351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCATAAAG GTAACCAGAC CTTGGGGGAT AGTTTAATAA
  ACCTTGCCAG TTGTATGGAG GAGACATGCA GATGTTTGTA AGGGTCGGGT ACATTATTAT
  Y
  CCGACAAGGC TTCGGCGAGA ATGTTCTTCT GTACGTGGAG ACGGATGTTC TCTGCAGAGG
  ACACTGCAGC TGGACTGATT TGCAGTCAGA GTCCCTGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45433593	mCV24238471	ABI	CRAMUS_MOUSE	f	SNP	C	C	C						T
ss51668462	NES14645394	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C	C		C	T		C
ss136041413	ENSMUSSNP5989663	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss321009352	CHEV_3_145683560	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30464022					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51668462	NES14645394	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145726351 () rs orientation: forward

Symbol	Name	Function Class
Gm40166	predicted gene, 40166	within coordinates
Syde2	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	within coordinates