rs30465219 SNP Detail

Summary

• ID
  rs30465219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48723025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT GTCTTCCACT TCTCAGGCTC
  Y
  GAGAACTGTG CCCTCAACAC CCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45930267	mCV25192958	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss133166452	ENSMUSSNP6409903	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss321794604	CHEV_6_48696090	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30465219					SNP	C	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48723025 () rs orientation: forward

Symbol	Name	Function Class
Gimap5	GTPase, IMAP family member 5	106 bp upstream
Gm28053	predicted gene, 28053	within coordinates
Rr135565	regulatory region 135565	576 bp proximal
Rr146257	regulatory region 146257	within coordinates
Rr368069	regulatory region 368069	within coordinates
Rr399641	regulatory region 399641	404 bp upstream
Rr399642	regulatory region 399642	1558 bp upstream
Tssr1832	transcription start site region 1832	1572 bp downstream
Tssr56207	transcription start site region 56207	78 bp upstream
Tssr56208	transcription start site region 56208	97 bp upstream
Tssr56209	transcription start site region 56209	132 bp upstream
Tssr56210	transcription start site region 56210	146 bp upstream
Tssr56211	transcription start site region 56211	616 bp upstream
Tssr56212	transcription start site region 56212	1833 bp upstream
Tssr60779	transcription start site region 60779	3 bp downstream
Tssr60780	transcription start site region 60780	1410 bp downstream
Tssr60781	transcription start site region 60781	1444 bp downstream
Tssr60782	transcription start site region 60782	1650 bp downstream