rs30465280 SNP Detail

Summary

• ID
  rs30465280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:104322329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTGTC TTTCCTAATG
  AAATATTAAG CTCTTTTAAA AATGAGATTT ACATGATTAA AAAAAAAAAG AAGAGTAAAT
  CCTTGCTTAA CTCATTGCAT AGATTTTTTT CTTAAGATAA GGTAAGGCAT TATGCAAAAT
  TTGGGAAGGT CCCATGGGAC TAGATTAGAG CTGAGAGTCT ATTTTCTTCC TCTTTAACTT
  R
  ACCTCTGAAC ATTCAGCACA GCCTCAGTAA AGTGTGTCAG CGTCATCCCC TAAACGCACT
  GTAGTGCTCC CAACACTGAG AAAACTGTTA ATCTTCTACT TAGAAAAATC TCAAAAGGCG
  GGAAAATAAT TGGAGAATGA GTACTCAAGA GTATTAAAAT CTAATTTGAT TTCTCATGCT
  TTTCTGATAC TAGAAGCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45929968	mCV23078144	ABI	CRAMUS_MOUSE	f	SNP		G	A				G	G
ss48031391	NES11895034	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A		G	A		G	A	G
ss133442363	ENSMUSSNP3609971	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss321874511	CHEV_6_104295362	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30465280					SNP	G	G	A	A	A	A	G	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48031391	NES11895034	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:104322329 () rs orientation: forward

Symbol	Name	Function Class
Tssr58027	transcription start site region 58027	443 bp upstream