rs30466375 SNP Detail

Summary

• ID
  rs30466375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171019235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGCTGTGCA TTTTGGGGGT GGGAGTTGAA GGTAGTTAGA CATGGTGATA CCAGGCTCTA
  ATTCCACTCC TTGGGAGGCA GAAGTAGGAG AGTTGCAAGT TGAAGGTCAG TGTGGGCAAC
  TTAGTATAAA CCTGTCTCAA CCTAACATAA AAAGGGGCTG GGCATGGTGG TGAGTGCCTG
  TAACTCTATC ATTTGGGAGG TAAAGGTAGT AAGAGGAGGT GGCCAAGGTA CAAGTAGATC
  TCTCAAGAAG TTAATTAATT AATTAAAATT TAAAGGGAAG AGATAACTTA GTGATAAGGT
  R
  TTTATTTTAG GGTTCGATCT CCAGTGGTAT TCTTTTTTAA GTTGCATGTA AATGAGATTA
  CACTATATTC AATGGAGCAA CAAGTTAAAA GAGTCCTGAA GGAAAATTCA TTTGGAAAGA
  GGCATCAGCA GTACTGCGCC CTTGCCCTTT AGTACGACAC AGATTCAGAT AAGGCTTGGG
  CTCAGGTTCC TCACCTGTAA AATCAGAAAA TGGGGCCAAA TGATCATTAG AGCTCTTCAG
  CAAATCTACA ATTCTATCAC TAAAATAGCT TGATATTTCA CTTTGAGGTT ATCCTGGCAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44932191	mCV24420980	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30466375					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171019235 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	779 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	within coordinates
Rr423236	regulatory region 423236	1995 bp distal
Rr423237	regulatory region 423237	1581 bp distal
Rr423238	regulatory region 423238	1320 bp distal