rs30466387 SNP Detail

Summary

• ID
  rs30466387
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89315369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT GTCTTCCCAG CTCAGTCCAG
  S
  AGCCACATCC TGGATGGAAG ACCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45933202	mCV24907697	ABI	CRAMUS_MOUSE	f	SNP		G	G				C		G
ss47999949	NES11908746	PERLEGEN	MM_PANEL2	f	SNP	G			C	C	G		C			C	C
ss133371785	ENSMUSSNP5930666	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321851933	CHEV_6_89288381	CHEVERUD	SCREENING_POP	f	SNP										C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30466387					SNP	G	G	G	C	C	G	C	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999949	NES11908746	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89315369 () rs orientation: forward

Symbol	Name	Function Class
Plxna1	plexin A1	Intron
Rr634106	regulatory region 634106	445 bp distal
Rr634107	regulatory region 634107	404 bp proximal
Rr634108	regulatory region 634108	1053 bp proximal