rs30466701 SNP Detail

Summary

• ID
  rs30466701
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41490076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTATGACAG CAAACCCTTC GTCTCTTGGG GGGTGGCTTC
  TGTTTTTTCT TGTGCCCCCC TCTTTCTCTC TGCTCTTTTT CATCATCCGA AGTATTGCTT
  W
  TCATTATTGA GGGACATTAG GCTGATCAAT AAAGTATGCC TATAGCTGAT GAATTGGGGG
  GGGGGGATAC AAATGCTTCA GGAATCAGGA AAATGCCTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46409413	mCV23834232	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				A		T
ss61386164	NES16764741	PERLEGEN	MM_PANEL2	f	SNP	A		A	T	A	A		A	T	A	A	T	A	A	A
ss136358645	ENSMUSSNP2326113	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30466701					SNP	A	A	A	T	A	A	A	A	T	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386164	NES16764741	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41490076 () rs orientation: forward

Symbol	Name	Function Class
Gm51670	predicted gene, 51670	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677060	regulatory region 677060	224 bp proximal
Rr677061	regulatory region 677061	728 bp proximal
Rr677062	regulatory region 677062	1469 bp proximal
Tssr84512	transcription start site region 84512	880 bp upstream
Tssr84513	transcription start site region 84513	908 bp upstream
Tssr84514	transcription start site region 84514	1070 bp upstream
Tssr84515	transcription start site region 84515	1155 bp upstream
Tssr84516	transcription start site region 84516	1190 bp upstream
Tssr84517	transcription start site region 84517	1223 bp upstream
Tssr84518	transcription start site region 84518	1923 bp upstream
Tssr84519	transcription start site region 84519	1971 bp upstream
Tssr88995	transcription start site region 88995	732 bp downstream
Tssr88996	transcription start site region 88996	766 bp downstream