rs30466890 SNP Detail

Summary

• ID
  rs30466890
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170416122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC ATGGTCAGGT CACCGGGTTG
  M
  CTGTCTTATA CACAACCACT GGTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44931328	mCV23245201	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss146138572	ENSMUSSNP3167381	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320111476	CHEV_1_172518684	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30466890					SNP	A	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170416122 () rs orientation: forward

Symbol	Name	Function Class
Cpgi994	CpG island 994	458 bp proximal
Nos1ap	nitric oxide synthase 1 (neuronal) adaptor protein	Intron
Rr423086	regulatory region 423086	within coordinates
Rr423087	regulatory region 423087	1298 bp proximal
Tssr14920	transcription start site region 14920	1198 bp downstream
Tssr14921	transcription start site region 14921	1238 bp downstream