rs30467045 SNP Detail

Summary

• ID
  rs30467045
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:46963009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTTTAC AGTTTAAAAA
  TCTCTTTCAC ATAAAATCAC TTTTATCCAG TTTTATATAA GGGTACAATG ATGGCCTGAG
  ACTGCCAGAG GGAGAGACCC TAAGCCATGC AGCTTGTATC ACCATCTACT ACTGAAGTTC
  ATCTCTCTCC TATCTTTGCC CTTCCTCCCC CTCCTCTCTG TGGCTGTGAA ATGCACTTCA
  M
  AAATGTTGAA AAAATATAGA TTAACAGTTT TCTGGGCACA AATTTAGTAT GCTATTTGTC
  TTGCATTTCC AGTACTGAAT TCCCAGTAAA TCAATTAATG CTTGTAAGAG TAGATGAATG
  AACATAGCAG AAATTGAAAG GCAAATTAAA ACATCTCTTC AGATATTACA TGAAAATTGA
  TTGATATCAT AGTTTAAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss44930643	mCV23237882	ABI	CRAMUS_MOUSE	f	SNP	A	C					A		C
ss47321985	NES11090273	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	C		C	C	C	A	C	C	C
ss149066334	ENSMUSSNP1796481	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30467045					SNP	A	C	C	C	A	C	A	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47321985	NES11090273	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:46963009 () rs orientation: forward

Symbol	Name	Function Class
Rr371227	regulatory region 371227	1201 bp downstream
Rr410622	regulatory region 410622	1813 bp distal
Rr410623	regulatory region 410623	1327 bp proximal
Tssr11557	transcription start site region 11557	1907 bp downstream
Tssr11558	transcription start site region 11558	1936 bp downstream