rs30468061 SNP Detail

Summary

• ID
  rs30468061
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136496874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA TGAAGAATTT TACAAATATT
  M
  CAAGTTCTAT TGAGGTCCTT ATTTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45932638	mCV23060071	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss133840282	ENSMUSSNP4349413	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30468061					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136496874 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	within coordinates
Cpgi18104	CpG island 18104	536 bp distal
Gm44140	predicted gene, 44140	1160 bp upstream
Rr133547	regulatory region 133547	1274 bp distal
Rr145858	regulatory region 145858	within coordinates
Rr145859	regulatory region 145859	1326 bp proximal
Rr400014	regulatory region 400014	1007 bp downstream
Rr400015	regulatory region 400015	610 bp downstream
Tssr59315	transcription start site region 59315	1066 bp downstream
Tssr59316	transcription start site region 59316	1025 bp downstream
Tssr59317	transcription start site region 59317	1001 bp downstream
Tssr59318	transcription start site region 59318	527 bp upstream
Tssr63803	transcription start site region 63803	1375 bp upstream
Tssr63804	transcription start site region 63804	1104 bp upstream
Tssr63805	transcription start site region 63805	799 bp upstream