rs30468094 SNP Detail

Summary

• ID
  rs30468094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41286028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT ACCAAAATCC CAAGCAAAGA
  Y
  GCATTTGTTC AGATCCGTGG TGTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss46409795	mCV22652736	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss50700309	NES14258800	PERLEGEN	MM_PANEL2	f	SNP					C		T	T	T
ss136353011	ENSMUSSNP116979	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322925102	CHEV_9_41182815	CHEVERUD	SCREENING_POP	f	SNP						C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30468094					SNP	C	C	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50700309	NES14258800	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41286028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21612	CpG island 21612	1516 bp proximal
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	1794 bp upstream
Rr677030	regulatory region 677030	within coordinates
Rr677031	regulatory region 677031	1198 bp proximal
Tssr84498	transcription start site region 84498	1660 bp upstream
Tssr84499	transcription start site region 84499	1680 bp upstream
Tssr84500	transcription start site region 84500	1734 bp upstream
Tssr84501	transcription start site region 84501	1756 bp upstream