rs30468812 SNP Detail

Summary

• ID
  rs30468812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164265041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAAAATTC TTCCACCATG AAAATGGTCA AAACATTCAT
  AAGGACGCAG CACCAGCGCA TGATGCCTCC AGAGAAAGGA AAGAAGGAAA GGAAATGGAC
  R
  AATAAGCAAA CTACCCAGCC CATCACTAGC CACAGTGACA GGCAGATCCC AGTCTCAGAC
  ACAGCTGCAG AACACACTGG AGGACACGGG GAGAGATGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss44931929	mCV24721790	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss145978547	ENSMUSSNP1235877	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30468812					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164265041 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Nme7	NME/NM23 family member 7	171 bp downstream
Tssr9784	transcription start site region 9784	1003 bp upstream
Tssr14731	transcription start site region 14731	47 bp upstream
Tssr14732	transcription start site region 14732	267 bp downstream
Tssr14733	transcription start site region 14733	376 bp downstream
Tssr14734	transcription start site region 14734	404 bp downstream
Tssr14735	transcription start site region 14735	472 bp downstream
Tssr14736	transcription start site region 14736	505 bp downstream
Tssr14737	transcription start site region 14737	568 bp downstream
Tssr14738	transcription start site region 14738	703 bp downstream
Tssr14739	transcription start site region 14739	869 bp downstream
Tssr14740	transcription start site region 14740	923 bp downstream
Tssr14741	transcription start site region 14741	952 bp downstream
Tssr14742	transcription start site region 14742	1059 bp downstream